STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWRI3579_g3296Chromatin assembly factor 1 subunit p50. (552 aa)    
Predicted Functional Partners:
AWRI3579_g1688
Chromatin assembly factor 1 subunit p60.
   
 
 0.959
AWRI3579_g2437
Histone acetyltransferase type B catalytic subunit.
   
 0.906
AWRI3579_g4505
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.905
AWRI3579_g504
Chromatin assembly factor 1 subunit p90.
    
 
 0.875
AWRI3579_g869
Transcriptional regulatory protein SDS3.
    
 0.800
AWRI3579_g4506
Histone H3; Belongs to the histone H3 family.
   
 0.765
AWRI3579_g1349
Histone H3-like centromeric protein CSE4.
   
 0.765
AWRI3579_g494
NASP-related protein sim3.
   
 
 0.746
AWRI3579_g3834
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.744
AWRI3579_g2818
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.741
Your Current Organism:
Hanseniaspora osmophila
NCBI taxonomy Id: 56408
Other names: ATCC 24231, CBS 313, CCRC 21475, CCRC:21475, DBVPG 6795, H. osmophila, IFO 10832, KCTC 7680, Kloeckeraspora osmophila
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.