STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWRI3579_g3075Pre-mRNA polyadenylation factor FIP1. (405 aa)    
Predicted Functional Partners:
AWRI3579_g3938
Protein CFT1.
   
 0.999
AWRI3579_g3828
Polyadenylation factor subunit 2.
   
 0.999
AWRI3579_g1992
Endoribonuclease YSH1.
    
 0.999
AWRI3579_g2264
mRNA 3'-end-processing protein YTH1.
    
 0.999
AWRI3579_g347
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.999
AWRI3579_g221
Pre-tRNA-processing protein PTA1.
    
 0.999
AWRI3579_g1423
mRNA 3'-end-processing protein RNA14.
   
 0.995
AWRI3579_g1379
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 0.994
AWRI3579_g2473
COMPASS component SWD2.
   
 0.992
AWRI3579_g3897
Nucleoporin NSP1.
   
  0.988
Your Current Organism:
Hanseniaspora osmophila
NCBI taxonomy Id: 56408
Other names: ATCC 24231, CBS 313, CCRC 21475, CCRC:21475, DBVPG 6795, H. osmophila, IFO 10832, KCTC 7680, Kloeckeraspora osmophila
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.