STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWRI3579_g2854E3 ubiquitin-protein ligase. (826 aa)    
Predicted Functional Partners:
AWRI3579_g2317
Polyubiquitin.
    
 0.988
AWRI3579_g3149
Ubiquitin-40S ribosomal protein S27a.
    
 0.964
AWRI3579_g1154
26S proteasome regulatory subunit RPN10.
    
 0.889
AWRI3579_g4394
Protein SNA3.
    
 
 0.888
AWRI3579_g472
Protein scalloped.
    
 0.887
AWRI3579_g406
Protein BMH2; Belongs to the 14-3-3 family.
    
 0.882
AWRI3579_g2126
Ubiquitin-conjugating enzyme E2 4; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.857
AWRI3579_g2890
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.845
AWRI3579_g2235
Protein LDB19.
    
 
 0.834
AWRI3579_g4307
Ubiquitin-conjugating enzyme E2 1; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.820
Your Current Organism:
Hanseniaspora osmophila
NCBI taxonomy Id: 56408
Other names: ATCC 24231, CBS 313, CCRC 21475, CCRC:21475, DBVPG 6795, H. osmophila, IFO 10832, KCTC 7680, Kloeckeraspora osmophila
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.