STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWRI3579_g90Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)    
Predicted Functional Partners:
AWRI3579_g4457
rRNA 2'-O-methyltransferase fibrillarin.
   
 0.999
AWRI3579_g3641
Ribosomal RNA-processing protein 9.
   
 0.999
AWRI3579_g2959
Nucleolar protein 56.
   
 0.999
AWRI3579_g2107
Nucleolar protein 58.
   
 0.999
AWRI3579_g4609
Pre-mRNA-processing factor 31.
    
 0.995
AWRI3579_g1414
U3 small nucleolar RNA-associated protein 15.
   
 0.995
AWRI3579_g4110
U3 small nucleolar RNA-associated protein 4.
   
 0.992
AWRI3579_g3317
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.992
AWRI3579_g411
Pre-mRNA-splicing helicase BRR2.
    
 0.989
AWRI3579_g3511
U4/U6 small nuclear ribonucleoprotein PRP4.
   
 0.988
Your Current Organism:
Hanseniaspora osmophila
NCBI taxonomy Id: 56408
Other names: ATCC 24231, CBS 313, CCRC 21475, CCRC:21475, DBVPG 6795, H. osmophila, IFO 10832, KCTC 7680, Kloeckeraspora osmophila
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