Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK03342.1 | SHK03363.1 | SAMN05216369_0096 | SAMN05216369_0097 | acyl-CoA thioester hydrolase. | Gluconolactonase. | 0.784 |
SHK03342.1 | SHK03375.1 | SAMN05216369_0096 | SAMN05216369_0098 | acyl-CoA thioester hydrolase. | Esterase. | 0.645 |
SHK03342.1 | SHK05841.1 | SAMN05216369_0096 | SAMN05216369_0223 | acyl-CoA thioester hydrolase. | 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.545 |
SHK03342.1 | SHK38385.1 | SAMN05216369_0096 | SAMN05216369_1784 | acyl-CoA thioester hydrolase. | Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.562 |
SHK03342.1 | SHK41337.1 | SAMN05216369_0096 | SAMN05216369_1921 | acyl-CoA thioester hydrolase. | [acyl-carrier-protein] S-malonyltransferase; Manually curated. | 0.698 |
SHK03342.1 | SHK46667.1 | SAMN05216369_0096 | SAMN05216369_2176 | acyl-CoA thioester hydrolase. | Beta-ketodecanoyl-[acyl-carrier-protein] synthase. | 0.605 |
SHK03342.1 | SHK63767.1 | SAMN05216369_0096 | SAMN05216369_2572 | acyl-CoA thioester hydrolase. | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.605 |
SHK03342.1 | SHK88867.1 | SAMN05216369_0096 | SAMN05216369_3492 | acyl-CoA thioester hydrolase. | 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase. | 0.545 |
SHK03342.1 | acpP | SAMN05216369_0096 | SAMN05216369_1923 | acyl-CoA thioester hydrolase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.678 |
SHK03342.1 | fliA | SAMN05216369_0096 | SAMN05216369_1805 | acyl-CoA thioester hydrolase. | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | 0.562 |
SHK03363.1 | SHK03342.1 | SAMN05216369_0097 | SAMN05216369_0096 | Gluconolactonase. | acyl-CoA thioester hydrolase. | 0.784 |
SHK03363.1 | SHK03375.1 | SAMN05216369_0097 | SAMN05216369_0098 | Gluconolactonase. | Esterase. | 0.653 |
SHK03375.1 | SHK03342.1 | SAMN05216369_0098 | SAMN05216369_0096 | Esterase. | acyl-CoA thioester hydrolase. | 0.645 |
SHK03375.1 | SHK03363.1 | SAMN05216369_0098 | SAMN05216369_0097 | Esterase. | Gluconolactonase. | 0.653 |
SHK03375.1 | acpP | SAMN05216369_0098 | SAMN05216369_1923 | Esterase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.938 |
SHK05841.1 | SHK03342.1 | SAMN05216369_0223 | SAMN05216369_0096 | 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. | acyl-CoA thioester hydrolase. | 0.545 |
SHK05841.1 | SHK41337.1 | SAMN05216369_0223 | SAMN05216369_1921 | 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. | [acyl-carrier-protein] S-malonyltransferase; Manually curated. | 0.520 |
SHK05841.1 | SHK63767.1 | SAMN05216369_0223 | SAMN05216369_2572 | 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.992 |
SHK05841.1 | SHK88867.1 | SAMN05216369_0223 | SAMN05216369_3492 | 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. | 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase. | 0.984 |
SHK05841.1 | acpP | SAMN05216369_0223 | SAMN05216369_1923 | 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.452 |
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