STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK05307.1MFS transporter, MHS family, proline/betaine transporter. (395 aa)    
Predicted Functional Partners:
rpmE
LSU ribosomal protein L31P; Binds the 23S rRNA.
   
    0.672
SHK39619.1
Riboflavin synthase alpha chain.
   
    0.588
SHK60441.1
Chorismate mutase /prephenate dehydratase.
   
 
 0.478
SHK26439.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
   
    0.439
SHK79646.1
Membrane fusion protein, multidrug efflux system.
  
   0.406
Your Current Organism:
Marinobacter antarcticus
NCBI taxonomy Id: 564117
Other names: CGMCC 1.10835, KCTC 23684, M. antarcticus, Marinobacter antarcticus Liu et al. 2012, Marinobacter sp. ZS2-30, strain ZS2-30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.