STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK13283.1Circadian clock protein KaiC. (490 aa)    
Predicted Functional Partners:
SHK09187.1
Signal transduction histidine kinase.
    
 
 0.853
SHK31924.1
Signal transduction histidine kinase.
    
 
 0.853
SHK58331.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
    
 
 0.853
SHK85048.1
Two-component system, NtrC family, sensor histidine kinase PilS.
    
 
 0.853
SHK13265.1
Hypothetical protein.
       0.802
SHK13299.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.749
SHK13323.1
Esterase, PHB depolymerase family.
 
     0.475
SHK73522.1
Sodium/proton antiporter, CPA1 family.
  
     0.402
Your Current Organism:
Marinobacter antarcticus
NCBI taxonomy Id: 564117
Other names: CGMCC 1.10835, KCTC 23684, M. antarcticus, Marinobacter antarcticus Liu et al. 2012, Marinobacter sp. ZS2-30, strain ZS2-30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.