STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK14057.1Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily. (315 aa)    
Predicted Functional Partners:
SHK16094.1
Cytochrome P450.
  
 0.923
SHK65367.1
DNA phosphorothioation-associated putative methyltransferase.
   
 0.679
SHK06876.1
Phenol 2-monooxygenase.
   
 0.655
SHK18723.1
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase.
   
 0.655
SHK22064.1
2-octaprenyl-6-methoxyphenol hydroxylase.
   
 0.655
SHK22077.1
2-octaprenylphenol hydroxylase.
   
 0.655
SHK31289.1
Lipid kinase, YegS/Rv2252/BmrU family.
   
 0.621
SHK14077.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.537
SHK06536.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
     
 0.526
SHK02371.1
Nucleoside-diphosphate-sugar epimerase.
   
 0.510
Your Current Organism:
Marinobacter antarcticus
NCBI taxonomy Id: 564117
Other names: CGMCC 1.10835, KCTC 23684, M. antarcticus, Marinobacter antarcticus Liu et al. 2012, Marinobacter sp. ZS2-30, strain ZS2-30
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