Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK13835.1 | SHK13848.1 | SAMN05216369_0630 | SAMN05216369_0631 | Predicted transcriptional regulator. | Plasmid stabilization system protein ParE. | 0.999 |
SHK13835.1 | SHK25412.1 | SAMN05216369_0630 | SAMN05216369_1218 | Predicted transcriptional regulator. | Hypothetical protein. | 0.598 |
SHK13848.1 | SHK13835.1 | SAMN05216369_0631 | SAMN05216369_0630 | Plasmid stabilization system protein ParE. | Predicted transcriptional regulator. | 0.999 |
SHK13848.1 | SHK25412.1 | SAMN05216369_0631 | SAMN05216369_1218 | Plasmid stabilization system protein ParE. | Hypothetical protein. | 0.601 |
SHK18924.1 | SHK24698.1 | SAMN05216369_0883 | SAMN05216369_1187 | Glutathione S-transferase. | Uncharacterized membrane protein SirB2. | 0.438 |
SHK18924.1 | SHK25412.1 | SAMN05216369_0883 | SAMN05216369_1218 | Glutathione S-transferase. | Hypothetical protein. | 0.474 |
SHK24698.1 | SHK18924.1 | SAMN05216369_1187 | SAMN05216369_0883 | Uncharacterized membrane protein SirB2. | Glutathione S-transferase. | 0.438 |
SHK24698.1 | SHK25412.1 | SAMN05216369_1187 | SAMN05216369_1218 | Uncharacterized membrane protein SirB2. | Hypothetical protein. | 0.632 |
SHK25235.1 | SHK25256.1 | SAMN05216369_1210 | SAMN05216369_1211 | Two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX. | MFS transporter, NNP family, nitrate/nitrite transporter. | 0.698 |
SHK25235.1 | SHK25322.1 | SAMN05216369_1210 | SAMN05216369_1214 | Two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX. | Respiratory nitrate reductase chaperone NarJ. | 0.737 |
SHK25235.1 | SHK25362.1 | SAMN05216369_1210 | SAMN05216369_1216 | Two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX. | Peptidyl-prolyl cis-trans isomerase C. | 0.464 |
SHK25235.1 | SHK25394.1 | SAMN05216369_1210 | SAMN05216369_1217 | Two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX. | cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. | 0.401 |
SHK25235.1 | SHK25412.1 | SAMN05216369_1210 | SAMN05216369_1218 | Two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX. | Hypothetical protein. | 0.652 |
SHK25256.1 | SHK25235.1 | SAMN05216369_1211 | SAMN05216369_1210 | MFS transporter, NNP family, nitrate/nitrite transporter. | Two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX. | 0.698 |
SHK25256.1 | SHK25322.1 | SAMN05216369_1211 | SAMN05216369_1214 | MFS transporter, NNP family, nitrate/nitrite transporter. | Respiratory nitrate reductase chaperone NarJ. | 0.954 |
SHK25256.1 | SHK25362.1 | SAMN05216369_1211 | SAMN05216369_1216 | MFS transporter, NNP family, nitrate/nitrite transporter. | Peptidyl-prolyl cis-trans isomerase C. | 0.806 |
SHK25256.1 | SHK25412.1 | SAMN05216369_1211 | SAMN05216369_1218 | MFS transporter, NNP family, nitrate/nitrite transporter. | Hypothetical protein. | 0.505 |
SHK25322.1 | SHK25235.1 | SAMN05216369_1214 | SAMN05216369_1210 | Respiratory nitrate reductase chaperone NarJ. | Two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX. | 0.737 |
SHK25322.1 | SHK25256.1 | SAMN05216369_1214 | SAMN05216369_1211 | Respiratory nitrate reductase chaperone NarJ. | MFS transporter, NNP family, nitrate/nitrite transporter. | 0.954 |
SHK25322.1 | SHK25362.1 | SAMN05216369_1214 | SAMN05216369_1216 | Respiratory nitrate reductase chaperone NarJ. | Peptidyl-prolyl cis-trans isomerase C. | 0.972 |
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