SHK29252.1 protein (Marinobacter antarcticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHK29252.1

Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family. (411 aa)

Predicted Functional Partners:

SHK29241.1

0.997

SHK29211.1

0.993

SHK29283.1

0.973

SHK29297.1

0.966

SHK17033.1

0.878

SHK42269.1

0.872

SHK40318.1

0.839

SHK40290.1

0.738

SHK07104.1

0.714

SHK40359.1

0.709

Your Current Organism:

Marinobacter antarcticus

NCBI taxonomy Id: 564117
Other names: CGMCC 1.10835, KCTC 23684, M. antarcticus, Marinobacter antarcticus Liu et al. 2012, Marinobacter sp. ZS2-30, strain ZS2-30

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHK07104.1	SHK17033.1	SAMN05216369_0287	SAMN05216369_0783	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	0.612
SHK07104.1	SHK29241.1	SAMN05216369_0287	SAMN05216369_1381	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.709
SHK07104.1	SHK29252.1	SAMN05216369_0287	SAMN05216369_1382	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.714
SHK07104.1	SHK29283.1	SAMN05216369_0287	SAMN05216369_1383	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	0.595
SHK07104.1	SHK40290.1	SAMN05216369_0287	SAMN05216369_1870	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	0.699
SHK07104.1	SHK40318.1	SAMN05216369_0287	SAMN05216369_1871	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.899
SHK07104.1	SHK40359.1	SAMN05216369_0287	SAMN05216369_1873	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	0.633
SHK07104.1	SHK42269.1	SAMN05216369_0287	SAMN05216369_1973	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	0.600
SHK17033.1	SHK07104.1	SAMN05216369_0783	SAMN05216369_0287	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	0.612
SHK17033.1	SHK29241.1	SAMN05216369_0783	SAMN05216369_1381	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.871
SHK17033.1	SHK29252.1	SAMN05216369_0783	SAMN05216369_1382	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.878
SHK17033.1	SHK29283.1	SAMN05216369_0783	SAMN05216369_1383	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	0.842
SHK17033.1	SHK29297.1	SAMN05216369_0783	SAMN05216369_1384	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	0.819
SHK17033.1	SHK40290.1	SAMN05216369_0783	SAMN05216369_1870	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	0.642
SHK17033.1	SHK40318.1	SAMN05216369_0783	SAMN05216369_1871	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.721
SHK17033.1	SHK40359.1	SAMN05216369_0783	SAMN05216369_1873	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	0.607
SHK29211.1	SHK29241.1	SAMN05216369_1380	SAMN05216369_1381	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.993
SHK29211.1	SHK29252.1	SAMN05216369_1380	SAMN05216369_1382	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.993
SHK29211.1	SHK29283.1	SAMN05216369_1380	SAMN05216369_1383	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	0.935
SHK29211.1	SHK29297.1	SAMN05216369_1380	SAMN05216369_1384	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	0.916

page 1 of 5

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About