Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK18384.1 | SHK22432.1 | SAMN05216369_0856 | SAMN05216369_1061 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Fumarase, class II. | 0.947 |
SHK18384.1 | SHK40421.1 | SAMN05216369_0856 | SAMN05216369_1876 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.954 |
SHK18384.1 | SHK63870.1 | SAMN05216369_0856 | SAMN05216369_2577 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Succinate dehydrogenase subunit C. | 0.965 |
SHK18384.1 | SHK63892.1 | SAMN05216369_0856 | SAMN05216369_2578 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Succinate dehydrogenase / fumarate reductase membrane anchor subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH). | 0.965 |
SHK18384.1 | SHK63910.1 | SAMN05216369_0856 | SAMN05216369_2579 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | 0.975 |
SHK18384.1 | SHK63937.1 | SAMN05216369_0856 | SAMN05216369_2580 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Succinate dehydrogenase subunit B. | 0.967 |
SHK18384.1 | SHK82089.1 | SAMN05216369_0856 | SAMN05216369_3258 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.969 |
SHK18384.1 | sucC | SAMN05216369_0856 | SAMN05216369_2585 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.414 |
SHK22432.1 | SHK18384.1 | SAMN05216369_1061 | SAMN05216369_0856 | Fumarase, class II. | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.947 |
SHK22432.1 | SHK40421.1 | SAMN05216369_1061 | SAMN05216369_1876 | Fumarase, class II. | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.919 |
SHK22432.1 | SHK63870.1 | SAMN05216369_1061 | SAMN05216369_2577 | Fumarase, class II. | Succinate dehydrogenase subunit C. | 0.989 |
SHK22432.1 | SHK63892.1 | SAMN05216369_1061 | SAMN05216369_2578 | Fumarase, class II. | Succinate dehydrogenase / fumarate reductase membrane anchor subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH). | 0.971 |
SHK22432.1 | SHK63910.1 | SAMN05216369_1061 | SAMN05216369_2579 | Fumarase, class II. | Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | 0.999 |
SHK22432.1 | SHK63937.1 | SAMN05216369_1061 | SAMN05216369_2580 | Fumarase, class II. | Succinate dehydrogenase subunit B. | 0.993 |
SHK22432.1 | SHK65528.1 | SAMN05216369_1061 | SAMN05216369_2667 | Fumarase, class II. | NAD-dependent formate dehydrogenase flavoprotein subunit. | 0.981 |
SHK22432.1 | SHK82089.1 | SAMN05216369_1061 | SAMN05216369_3258 | Fumarase, class II. | Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.990 |
SHK22432.1 | sucC | SAMN05216369_1061 | SAMN05216369_2585 | Fumarase, class II. | succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.803 |
SHK22432.1 | sucD | SAMN05216369_1061 | SAMN05216369_2586 | Fumarase, class II. | succinyl-CoA synthetase alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.894 |
SHK40421.1 | SHK18384.1 | SAMN05216369_1876 | SAMN05216369_0856 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.954 |
SHK40421.1 | SHK22432.1 | SAMN05216369_1876 | SAMN05216369_1061 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Fumarase, class II. | 0.919 |
page 1 of 6