STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK64919.1Thiamine transport system ATP-binding protein. (204 aa)    
Predicted Functional Partners:
SHK64938.1
Thiamine transport system permease protein.
 
 
 0.985
SHK64955.1
Thiamine transport system substrate-binding protein.
 
 
  0.964
SHK64891.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
    
0.674
SHK62638.1
iron(III) transport system permease protein.
  
 
 0.656
SHK64859.1
Cholesterol transport system auxiliary component.
       0.622
SHK64872.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
       0.622
SHK64907.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
       0.622
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
     0.599
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.591
rpsI
Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
     0.573
Your Current Organism:
Marinobacter antarcticus
NCBI taxonomy Id: 564117
Other names: CGMCC 1.10835, KCTC 23684, M. antarcticus, Marinobacter antarcticus Liu et al. 2012, Marinobacter sp. ZS2-30, strain ZS2-30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.