STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK74028.1Hypothetical protein. (324 aa)    
Predicted Functional Partners:
SHK74066.1
TRAP transporter, 4TM/12TM fusion protein.
 
 
  0.991
SHK41538.1
TRAP transporter, 4TM/12TM fusion protein.
 
    0.831
SHK81089.1
TRAP transporter, 4TM/12TM fusion protein.
 
    0.828
SHK24775.1
Nucleotide-binding universal stress protein, UspA family.
 
     0.537
SHK74082.1
Two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB.
 
     0.476
SHK74109.1
Two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD.
    
  0.407
Your Current Organism:
Marinobacter antarcticus
NCBI taxonomy Id: 564117
Other names: CGMCC 1.10835, KCTC 23684, M. antarcticus, Marinobacter antarcticus Liu et al. 2012, Marinobacter sp. ZS2-30, strain ZS2-30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.