STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW13135.1Endonuclease/Exonuclease/phosphatase family protein. (324 aa)    
Predicted Functional Partners:
SDW67971.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.929
SDX62087.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.929
SDX65406.1
Cysteine desulfurase family protein, VC1184 subfamily.
    
   0.929
SDW74244.1
Hypothetical glycoside hydrolase 5.
  
 
 0.775
SDW13179.1
Hypothetical protein.
       0.711
SDW94410.1
4-alpha-glucanotransferase.
 
  
 0.683
SDX46305.1
Cardiolipin synthase.
  
 
  0.628
leuD
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.618
SDW94448.1
Glycogen operon protein; Belongs to the glycosyl hydrolase 13 family.
    
 0.525
SDW57624.1
Hypothetical protein.
  
     0.514
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.