STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW15225.1Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid). (238 aa)    
Predicted Functional Partners:
SDW15185.1
Capsular exopolysaccharide family.
 
 
 0.979
SDX56034.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.967
SDX56517.1
CoA-binding domain-containing protein.
 
 0.848
SDW15261.1
Nucleoside-diphosphate-sugar epimerase.
 
  
 0.770
SDX53930.1
UDP-N-acetylglucosamine 4,6-dehydratase (inverting).
 
 0.729
SDX56552.1
Polysaccharide export outer membrane protein.
 
 
 0.645
gmd
GDPmannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.637
SDW24239.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.
 
 
 0.596
SDX62742.1
Polysaccharide export outer membrane protein.
  
 
 0.581
SDX53965.1
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.569
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.