STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW29648.1Beta-barrel assembly machine subunit BamF. (179 aa)    
Predicted Functional Partners:
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
     
 0.771
SDX30296.1
Protein of unknown function.
  
     0.770
SDW94667.1
Hypothetical protein.
  
     0.769
SDW49327.1
Hypothetical protein.
  
    0.760
SDW25079.1
Hypothetical protein.
  
     0.758
SDW18772.1
Hypothetical protein.
  
     0.748
SDW28259.1
Hypothetical protein.
  
     0.745
SDX62119.1
Yip1 domain-containing protein.
  
     0.743
SDW93074.1
Prepilin peptidase CpaA.
  
     0.732
SDW93007.1
TPR repeat-containing protein.
  
     0.722
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.