STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW09289.1Protocatechuate 3,4-dioxygenase, beta subunit. (240 aa)    
Predicted Functional Partners:
SDW09329.1
Protocatechuate 3,4-dioxygenase, alpha subunit.
 
0.999
SDW47257.1
P-hydroxybenzoate 3-monooxygenase.
  
 0.993
SDW09249.1
4-carboxymuconolactone decarboxylase.
 
 
 0.984
SDW08368.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.980
SDW09375.1
Uncharacterized conserved protein, DUF849 family.
 
     0.869
SDW56898.1
3-oxoadipate enol-lactonase.
 
  
 0.823
SDX70308.1
ferredoxin-NAD(P)+ reductase (naphthalene dioxygenase ferredoxin-specific).
  
 
 0.764
SDW09207.1
LysR family transcriptional regulator, pca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
 
     0.757
SDX29414.1
3-oxoadipate enol-lactonase.
 
  
 0.708
SDW42769.1
3-oxoadipate enol-lactonase.
 
  
 0.643
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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