STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW49723.1Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase. (217 aa)    
Predicted Functional Partners:
SDW49677.1
Uncharacterized conserved protein YgbK, DUF1537 family.
    0.995
SDW49758.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
    0.868
SDW49638.1
2-hydroxy-3-oxopropionate reductase.
 
    0.862
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.798
SDW49606.1
3-oxoadipate enol-lactonase.
    
  0.785
SDW49573.1
Putative tricarboxylic transport membrane protein.
       0.773
SDW49792.1
Uncharacterized membrane protein YfcA.
       0.773
SDW49541.1
Tripartite tricarboxylate transporter TctB family protein.
       0.741
SDW92400.1
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
  
  
  0.703
SDW74589.1
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
  
     0.659
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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