STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW42643.1TRAP transporter, 4TM/12TM fusion protein. (649 aa)    
Predicted Functional Partners:
SDW42696.1
Hypothetical protein.
    0.910
SDX43416.1
Hypothetical protein.
    0.856
SDW72903.1
Hypothetical protein.
    0.830
SDW74746.1
Hypothetical protein.
 
    0.812
SDW94048.1
Hypothetical protein.
    0.812
SDW42566.1
aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A; Belongs to the amidase family.
       0.773
SDW42600.1
Hypothetical protein.
       0.773
SDW42528.1
Polysaccharide deacetylase.
       0.752
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.