STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW57120.1TRAP transporter, DctM subunit. (442 aa)    
Predicted Functional Partners:
SDW57153.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.995
SDW57082.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
 
  0.989
SDW57192.1
Predicted N-formylglutamate amidohydrolase.
 
     0.904
SDW57221.1
Transcriptional regulator, RpiR family.
 
     0.847
SDW57009.1
Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.
 
     0.780
SDW57048.1
Glutamine synthetase.
 
     0.757
SDW56971.1
Hypothetical protein.
 
     0.625
SDX40143.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.474
SDW71494.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.468
SDX19447.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.420
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.