STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW43282.1Hypothetical protein. (255 aa)    
Predicted Functional Partners:
SDW43316.1
6-pyruvoyl-tetrahydropterin synthase.
 
     0.936
SDW43350.1
Hypothetical protein.
 
    0.936
SDW43383.1
Riboflavin-specific deaminase C-terminal domain-containing protein.
 
    0.844
SDW43185.1
Methyltransferase, FkbM family.
 
     0.839
SDW43114.1
Glycosyl transferases group 1.
 
    0.815
SDX15370.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.815
SDX15184.1
Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.773
SDX15153.1
Hypothetical protein.
 
     0.761
SDX15122.1
Uncharacterized membrane protein YbhN, UPF0104 family.
 
     0.709
SDX20712.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 
 0.685
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.