STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW65952.1Transcriptional regulator, LacI family. (328 aa)    
Predicted Functional Partners:
SDX33810.1
Glutamate synthase (NADPH/NADH) large chain.
    
 
 0.931
SDW51508.1
Transcriptional regulator, LacI family.
  
     0.774
SDW65993.1
Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.697
SDW66032.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-).
 
 
  0.679
SDX31178.1
Phosphocarrier protein.
   
 
 0.627
SDW15043.1
Transcriptional regulator, LacI family.
  
 
  0.500
SDW66106.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
 
  0.497
SDW65874.1
FAD linked oxidases, C-terminal domain.
       0.455
SDW65914.1
Integrase core domain-containing protein.
       0.455
SDW66140.1
Ribose transport system substrate-binding protein.
 
 
  0.443
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.