STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW66695.1Peptide/nickel transport system substrate-binding protein. (534 aa)    
Predicted Functional Partners:
SDW66730.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
     0.944
SDW66544.1
Peptide/nickel transport system permease protein.
 
  0.854
SDW66574.1
Peptide/nickel transport system permease protein.
 
  0.843
SDW66614.1
Peptide/nickel transport system ATP-binding protein.
 
 
  0.800
SDW66656.1
Peptide/nickel transport system ATP-binding protein.
 
 0.785
SDX11358.1
Peptide/nickel transport system permease protein.
 
  0.686
SDX11321.1
Peptide/nickel transport system permease protein.
 
  0.670
SDX33237.1
Peptide/nickel transport system permease protein.
 
  0.652
SDX33196.1
Oligopeptide transport system permease protein.
 
  0.614
SDX64266.1
Peptide/nickel transport system permease protein.
 
  0.598
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.