STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW92862.1OmpA family protein. (187 aa)    
Predicted Functional Partners:
SDW92827.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
    0.907
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 0.894
SDW92792.1
Pilus assembly protein CpaB.
 
     0.838
SDW92890.1
Pilus assembly protein CpaE.
 
     0.833
SDW93044.1
Flp pilus assembly protein TadD, contains TPR repeats.
 
     0.833
SDW93074.1
Prepilin peptidase CpaA.
 
     0.799
SDW93007.1
TPR repeat-containing protein.
 
     0.796
SDW92944.1
Tight adherence protein B.
 
     0.706
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.682
SDW92979.1
Type II secretion system protein F (GspF).
 
     0.656
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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