STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW94048.1Hypothetical protein. (323 aa)    
Predicted Functional Partners:
SDW94079.1
TRAP transporter, 4TM/12TM fusion protein.
 
  0.989
SDX43484.1
TRAP transporter, 4TM/12TM fusion protein.
    0.813
SDW42643.1
TRAP transporter, 4TM/12TM fusion protein.
    0.812
SDW74703.1
TRAP transporter, 4TM/12TM fusion protein.
    0.812
SDW72822.1
TRAP transporter, 4TM/12TM fusion protein.
    0.811
SDX08417.1
Two-component system, chemotaxis family, CheB/CheR fusion protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
    
  0.778
SDW74746.1
Hypothetical protein.
  
     0.773
SDW94017.1
Two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD.
    
  0.414
SDW93986.1
Two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB.
       0.413
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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