STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX05865.1Oxidoreductase family, NAD-binding Rossmann fold. (304 aa)    
Predicted Functional Partners:
SDX05839.1
2-methylcitrate dehydratase PrpD.
       0.648
SDX05895.1
C4-dicarboxylate transporter, DctM subunit.
       0.603
SDX33021.1
KduI/IolB family protein.
  
  
 0.524
SDX05929.1
C4-dicarboxylate transporter, DctQ subunit.
       0.518
SDX53965.1
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.488
SDW46831.1
NAD(P)H dehydrogenase (quinone).
   
 
  0.464
SDX29977.1
NADH dehydrogenase.
   
 
  0.464
SDX29727.1
Predicted dehydrogenase.
  
     0.434
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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