STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX07037.1NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family. (191 aa)    
Predicted Functional Partners:
SDX06997.1
Choline dehydrogenase.
       0.773
SDX07066.1
Acyl-CoA dehydrogenase.
 
  
  0.670
SDW24472.1
Natural product biosynthesis luciferase-like monooxygenase domain-containing protein.
  
 
  0.662
SDX70308.1
ferredoxin-NAD(P)+ reductase (naphthalene dioxygenase ferredoxin-specific).
  
 
  0.662
SDX41422.1
Dihydrouracil dehydrogenase (NAD+).
  
 
  0.634
SDX13543.1
Alkanesulfonate monooxygenase.
   
 
  0.596
SDW43035.1
cob(II)yrinic acid a,c-diamide reductase.
  
 
  0.576
SDX07093.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
    0.535
SDX06936.1
Hypothetical protein.
       0.519
SDX06964.1
Catechol 1,2-dioxygenase.
       0.519
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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