STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX20534.1Hypothetical protein. (78 aa)    
Predicted Functional Partners:
SDX50173.1
Hypothetical protein.
  
     0.745
SDX20594.1
Cytochrome c-type biogenesis protein CcmH.
 
   
 0.711
SDX20564.1
Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.710
SDW98046.1
Predicted secreted protein.
  
     0.532
SDX45360.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.523
SDX31496.1
Hypothetical protein.
  
     0.498
SDX48672.1
8-oxo-dGTP pyrophosphatase MutT, NUDIX family.
 
     0.495
SDX20678.1
Sarcosine oxidase subunit delta.
 
     0.460
SDX20740.1
Sarcosine oxidase subunit gamma.
 
     0.423
SDX20498.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.417
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.