STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX32228.1Hypothetical protein. (1019 aa)    
Predicted Functional Partners:
SDX45692.1
Nucleoid-associated protein YgaU, contains BON and LysM domains.
  
 
   0.783
SDW30866.1
Rhomboid family protein.
  
     0.750
SDW47748.1
Protein of unknown function.
  
     0.747
SDX41584.1
Hypothetical protein.
  
     0.739
SDX35096.1
Hypothetical protein.
  
     0.737
SDX41319.1
Hypothetical protein.
  
     0.737
SDX42250.1
Rod shape-determining protein MreD.
  
     0.728
SDW29998.1
Hypothetical protein.
  
     0.716
SDW69107.1
Putative peptidoglycan binding domain-containing protein.
  
     0.713
SDW25079.1
Hypothetical protein.
  
     0.710
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.