STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX45692.1Nucleoid-associated protein YgaU, contains BON and LysM domains. (569 aa)    
Predicted Functional Partners:
SDX80591.1
Bacteriophage lambda head decoration protein D.
  
 
 0.961
SDX93957.1
Bacteriophage lambda head decoration protein D.
  
 
 0.961
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.835
SDX45721.1
Hypothetical protein; Belongs to the LOG family.
    
  0.789
SDX32228.1
Hypothetical protein.
  
 
   0.783
SDX45663.1
ATP-binding cassette, subfamily B.
       0.683
dut
dUTP pyrophosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
   
 
 0.570
SDW86149.1
LysM domain-containing protein.
    
 0.561
SDW28927.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
   
  
 0.553
SDX22823.1
Tellurite resistance protein.
  
     0.504
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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