STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX42250.1Rod shape-determining protein MreD. (179 aa)    
Predicted Functional Partners:
SDX42281.1
Rod shape-determining protein MreC.
 
     0.880
SDX42219.1
Peptidoglycan glycosyltransferase.
  
    0.856
SDX35096.1
Hypothetical protein.
  
     0.768
SDW30866.1
Rhomboid family protein.
  
     0.762
SDW25079.1
Hypothetical protein.
  
     0.752
SDW42323.1
Hypothetical protein.
  
     0.742
SDX24057.1
Sporulation related domain-containing protein.
  
     0.737
SDX32228.1
Hypothetical protein.
  
     0.728
SDX42312.1
Rod shape-determining protein MreB.
       0.728
SDW97165.1
Hypothetical protein.
  
     0.723
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.