STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX49565.1Hypothetical protein. (443 aa)    
Predicted Functional Partners:
SDX49639.1
Na+/proline symporter.
 
   
 0.842
SDX49618.1
Hypothetical protein.
 
     0.811
SDW53360.1
Phasin protein.
  
     0.706
SDX62147.1
Hypothetical protein.
  
     0.653
SDX40464.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.646
SDX49669.1
Flagellar motor switch protein FliM.
 
     0.634
SDW13179.1
Hypothetical protein.
  
     0.614
SDX35219.1
Hypothetical protein.
  
     0.603
SDW96934.1
Hypothetical protein.
  
  
  0.593
SDX49591.1
Response regulator receiver domain-containing protein.
       0.586
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.