STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX59404.1Hypothetical protein. (842 aa)    
Predicted Functional Partners:
SDX59325.1
Unsaturated rhamnogalacturonyl hydrolase.
 
     0.944
SDX59453.1
Alpha-1,4-digalacturonate transport system substrate-binding protein.
 
     0.937
SDX59488.1
Alpha-1,4-digalacturonate transport system permease protein.
 
     0.888
SDX59526.1
Alpha-1,4-digalacturonate transport system permease protein.
 
     0.882
kduI-2
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.846
SDX59285.1
Transcriptional regulator, LacI family.
 
     0.814
SDW52878.1
Hemoglobin/transferrin/lactoferrin receptor protein.
  
 
 
 0.803
SDW15405.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
    
 
 0.788
SDX59560.1
Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.700
SDW52468.1
TonB family C-terminal domain-containing protein.
  
  
  0.556
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.