STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX60134.1methylmalonyl-CoA epimerase. (163 aa)    
Predicted Functional Partners:
SDW72411.1
methylmalonyl-CoA mutase.
 
  
 0.916
SDX60098.1
Hypothetical protein.
 
     0.856
SDX60171.1
Aminotransferase.
 
 
  0.845
SDW90521.1
(R)-ethylmalonyl-CoA mutase.
    
 0.782
SDW72740.1
propionyl-CoA carboxylase carboxyltransferase subunit.
 
 
 0.781
SDX59902.1
Peptide/nickel transport system substrate-binding protein.
 
     0.752
SDX60029.1
Ureidoglycolate lyase.
 
     0.749
SDW98015.1
methylmalonyl-CoA epimerase.
 
  
 
0.741
SDX59932.1
Predicted dehydrogenase.
 
    0.733
SDX60278.1
Protein of unknown function.
 
     0.728
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.