STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX67202.1Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains. (298 aa)    
Predicted Functional Partners:
SDX67233.1
Hypothetical protein.
 
  
  0.864
SDX67357.1
Helicase conserved C-terminal domain-containing protein.
 
     0.863
SDX67294.1
ATP-dependent DNA helicase RecG.
 
 
  0.837
SDX67389.1
PglZ domain-containing protein.
 
     0.835
SDX67266.1
Hypothetical protein.
 
     0.830
SDX67328.1
DNA methylase.
 
     0.830
SDX67422.1
Hypothetical protein.
 
     0.818
SDX80122.1
SNF2 family N-terminal domain-containing protein.
 
     0.656
SDX67172.1
WGR domain-containing protein, predicted DNA-binding domain in MolR.
       0.458
SDX69960.1
Lysozyme.
  
     0.426
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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