STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX70368.1Predicted arabinose efflux permease, MFS family. (453 aa)    
Predicted Functional Partners:
SDX70401.1
Hypothetical protein.
       0.773
SDX71023.1
Hypothetical protein.
 
     0.753
SDX70308.1
ferredoxin-NAD(P)+ reductase (naphthalene dioxygenase ferredoxin-specific).
     
 0.709
SDX70968.1
Hypothetical protein NreA.
 
     0.704
SDX70997.1
HupE / UreJ protein.
 
     0.699
SDX70277.1
Glutaredoxin.
       0.689
SDX70338.1
Transcriptional regulator, MerR family.
       0.689
SDX70245.1
Cu+-exporting ATPase.
     
 0.521
SDX70432.1
Glutaredoxin.
       0.485
SDW50175.1
Homoserine dehydrogenase.
   
  0.461
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.