STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX75087.1TRAP-type C4-dicarboxylate transport system, small permease component. (187 aa)    
Predicted Functional Partners:
SDX75059.1
TRAP transporter, DctM subunit.
 
  0.967
SDX75030.1
Predicted transcription regulator, contains HTH domain, MarR family.
 
     0.945
SDX75119.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.915
SDX74994.1
Hypothetical protein.
 
     0.888
SDW09127.1
TRAP transporter, DctM subunit.
 
  0.516
SDW56506.1
TRAP transporter, DctM subunit.
  
  0.439
SDW94803.1
TRAP transporter, DctM subunit.
  
  0.439
SDX10688.1
TRAP transporter, DctM subunit.
  
  0.439
SDX12278.1
TRAP transporter, DctM subunit.
  
  0.439
SDX13414.1
TRAP transporter, DctM subunit.
  
  0.439
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.