SDX82967.1 protein (Roseicitreum antarcticum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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a 3D structure is known or predicted

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

SDX82967.1

Peptidase M15. (226 aa)

Predicted Functional Partners:

SDX82929.1

0.557

SDX82997.1

0.467

SDX71933.1

0.424

SDX85276.1

0.423

SDX83668.1

0.417

SDX80464.1

0.409

SDX86221.1

0.407

Your Current Organism:

Roseicitreum antarcticum

NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDX71933.1	SDX82967.1	SAMN04488238_1172	SAMN04488238_12717	Hypothetical protein.	Peptidase M15.	0.424
SDX71933.1	SDX83668.1	SAMN04488238_1172	SAMN04488238_12810	Hypothetical protein.	Phage tail tape measure protein, lambda family.	0.657
SDX71933.1	SDX86221.1	SAMN04488238_1172	SAMN04488238_1326	Hypothetical protein.	Phage tail tape measure protein, lambda family.	0.656
SDX80464.1	SDX82967.1	SAMN04488238_12414	SAMN04488238_12717	Hypothetical protein.	Peptidase M15.	0.409
SDX80464.1	SDX83668.1	SAMN04488238_12414	SAMN04488238_12810	Hypothetical protein.	Phage tail tape measure protein, lambda family.	0.644
SDX80464.1	SDX86221.1	SAMN04488238_12414	SAMN04488238_1326	Hypothetical protein.	Phage tail tape measure protein, lambda family.	0.643
SDX82929.1	SDX82967.1	SAMN04488238_12716	SAMN04488238_12717	Hypothetical protein.	Peptidase M15.	0.557
SDX82967.1	SDX71933.1	SAMN04488238_12717	SAMN04488238_1172	Peptidase M15.	Hypothetical protein.	0.424
SDX82967.1	SDX80464.1	SAMN04488238_12717	SAMN04488238_12414	Peptidase M15.	Hypothetical protein.	0.409
SDX82967.1	SDX82929.1	SAMN04488238_12717	SAMN04488238_12716	Peptidase M15.	Hypothetical protein.	0.557
SDX82967.1	SDX82997.1	SAMN04488238_12717	SAMN04488238_12718	Peptidase M15.	Hypothetical protein.	0.467
SDX82967.1	SDX83668.1	SAMN04488238_12717	SAMN04488238_12810	Peptidase M15.	Phage tail tape measure protein, lambda family.	0.417
SDX82967.1	SDX85276.1	SAMN04488238_12717	SAMN04488238_13018	Peptidase M15.	Hypothetical protein.	0.423
SDX82967.1	SDX86221.1	SAMN04488238_12717	SAMN04488238_1326	Peptidase M15.	Phage tail tape measure protein, lambda family.	0.407
SDX82997.1	SDX82967.1	SAMN04488238_12718	SAMN04488238_12717	Hypothetical protein.	Peptidase M15.	0.467
SDX83668.1	SDX71933.1	SAMN04488238_12810	SAMN04488238_1172	Phage tail tape measure protein, lambda family.	Hypothetical protein.	0.657
SDX83668.1	SDX80464.1	SAMN04488238_12810	SAMN04488238_12414	Phage tail tape measure protein, lambda family.	Hypothetical protein.	0.644
SDX83668.1	SDX82967.1	SAMN04488238_12810	SAMN04488238_12717	Phage tail tape measure protein, lambda family.	Peptidase M15.	0.417
SDX83668.1	SDX85276.1	SAMN04488238_12810	SAMN04488238_13018	Phage tail tape measure protein, lambda family.	Hypothetical protein.	0.619
SDX85276.1	SDX82967.1	SAMN04488238_13018	SAMN04488238_12717	Hypothetical protein.	Peptidase M15.	0.423

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

29

average node degree:

5.27

avg. local clustering coefficient:

0.883

expected number of edges:

10

PPI enrichment p-value:

1.82e-06

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009423

Chorismate biosynthetic process

7 of 7

2.59

6.31

3.07e-13

GO:0009073

Aromatic amino acid family biosynthetic process

7 of 18

2.18

4.9

1.42e-11

GO:0008652

Cellular amino acid biosynthetic process

7 of 123

1.34

1.77

9.54e-07

GO:0019438

Aromatic compound biosynthetic process

9 of 243

1.16

1.51

7.49e-08

GO:1901362

Organic cyclic compound biosynthetic process

9 of 284

1.09

1.33

2.55e-07

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003855

3-dehydroquinate dehydratase activity

2 of 2

2.59

0.86

0.0276

GO:0016838

Carbon-oxygen lyase activity, acting on phosphates

2 of 4

2.29

0.85

0.0276

GO:0016835

Carbon-oxygen lyase activity

4 of 85

1.26

0.68

0.0276

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005737

Cytoplasm

10 of 1511

0.41

0.28

0.0335

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1484

Aromatic amino acid family biosynthetic process

7 of 20

2.13

4.59

5.55e-11

CL:1485

Chorismate metabolic process, and Aromatic amino acid family biosynthetic process, prephenate pathway

6 of 12

2.29

4.49

4.76e-10

CL:1488

Chorismate biosynthetic process

5 of 5

2.59

4.48

2.41e-09

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00400

Phenylalanine, tyrosine and tryptophan biosynthesis

9 of 25

2.14

6.35

2.95e-16

map01230

Biosynthesis of amino acids

9 of 156

1.35

2.19

5.31e-10

map01110

Biosynthesis of secondary metabolites

9 of 475

0.87

5.71e-06

map01100

Metabolic pathways

10 of 1732

0.35

0.26

0.0290

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005829

Cytosol

8 of 667

0.67

0.45

0.0127

GOCC:0005622

Intracellular

11 of 1745

0.39

0.3

0.0127

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0057

Aromatic amino acid biosynthesis

7 of 13

2.32

5.62

1.10e-12

KW-0456

Lyase

4 of 81

1.28

0.97

0.0032

KW-0963

Cytoplasm

5 of 232

0.92

0.63

0.0098

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF01220

Dehydroquinase class II

2 of 2

2.59

0.92

0.0211

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