STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX94023.1Phage portal protein, lambda family. (498 aa)    
Predicted Functional Partners:
SDX94085.1
Phage terminase large subunit (GpA).
 
    0.945
SDX93989.1
Peptidase family S49.
 
    0.935
SDX93957.1
Bacteriophage lambda head decoration protein D.
 
     0.913
SDX71895.1
Phage terminase large subunit (GpA).
 
    0.784
SDX80491.1
Phage terminase, large subunit GpA.
 
    0.784
SDX85314.1
Phage terminase, large subunit GpA.
 
    0.784
SDX94050.1
Hypothetical protein.
       0.777
SDX80616.1
Phage major capsid protein E.
 
     0.776
SDX97741.1
Phage major capsid protein E.
 
     0.776
SDX80591.1
Bacteriophage lambda head decoration protein D.
 
     0.773
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.