STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORU96005.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)    
Predicted Functional Partners:
ORU95873.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.976
ORV00486.1
Fatty acyl-AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.908
ORV00730.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.861
ORV00545.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.861
ORU95716.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.861
ORU95679.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.854
ORU99143.1
ATP-dependent RNA helicase HrpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.812
ORU96020.1
DNA repair exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.797
ORU95361.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.782
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 0.780
Your Current Organism:
Mycobacterium bohemicum
NCBI taxonomy Id: 56425
Other names: CIP 105808, CIP 105811, DSM 44277, JCM 12402, M. bohemicum
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