STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060S3N5Uncharacterized protein. (167 aa)    
Predicted Functional Partners:
A0A060SPL8
Uncharacterized protein.
   
 0.890
A0A060SI58
EGF-like domain-containing protein.
   
 0.583
A0A060SMV6
SKIP_SNW domain-containing protein.
    
  0.579
A0A060SG12
MPN domain-containing protein.
    
  0.553
A0A060SH32
Uncharacterized protein.
    
  0.548
A0A060SSE1
Uncharacterized protein.
    
  0.548
A0A060S4T8
Uncharacterized protein.
    
  0.541
A0A060SHW9
Uncharacterized protein.
    
  0.536
A0A060SIT5
WD_REPEATS_REGION domain-containing protein.
    
  0.508
A0A060SG43
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
    
  0.506
Your Current Organism:
Trametes cinnabarina
NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.
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