STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060S547Uncharacterized protein. (692 aa)    
Predicted Functional Partners:
A0A060SFY0
Tr-type G domain-containing protein.
   
 0.975
A0A060S949
MPN domain-containing protein.
   
 0.974
A0A060S691
TPR_REGION domain-containing protein.
   
 0.972
A0A060SEC9
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.969
A0A060SDS3
Small nuclear ribonucleoprotein Sm D2.
   
 0.968
A0A060SER0
Uncharacterized protein.
   
 0.968
A0A060SHX8
Sm domain-containing protein.
   
  0.963
A0A060SFS6
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 0.961
A0A060SWP8
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.961
A0A060S3F4
Small nuclear ribonucleoprotein G.
   
  0.948
Your Current Organism:
Trametes cinnabarina
NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.
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