STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060S5N4Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (472 aa)    
Predicted Functional Partners:
A0A060SC47
SRP9-21 domain-containing protein.
   
 0.984
A0A060SEL4
SRP72 domain-containing protein.
   
 0.983
A0A060SFL0
Uncharacterized protein.
   
 0.983
A0A060SQW7
Uncharacterized protein.
    
 0.983
A0A060SLU6
Uncharacterized protein.
    
 0.982
A0A060S8H5
SRP54 domain-containing protein.
 
0.981
A0A060SU45
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
   
 0.937
A0A060SM28
Ribosomal_L18_c domain-containing protein.
   
 
 0.930
A0A060S246
KOW domain-containing protein.
   
 0.926
A0A060SAJ9
Uncharacterized protein.
   
 0.925
Your Current Organism:
Trametes cinnabarina
NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.
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