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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060SC33Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (420 aa)    
Predicted Functional Partners:
A0A060SCE8
Histone H2A; Belongs to the histone H2A family.
   
 
 0.982
A0A060SXL3
Uncharacterized protein.
   
 
 0.913
A0A060S891
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
    
   0.890
A0A060SFI2
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.838
A0A060S3P5
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
   0.813
A0A060S8Q7
Uncharacterized protein.
    
 
 0.810
A0A060SFK3
Histone H2A; Belongs to the histone H2A family.
    
 
 0.810
A0A060SQ07
Histone H2A; Belongs to the histone H2A family.
    
 
 0.810
A0A060SVF6
Histone H2A; Belongs to the histone H2A family.
    
 
 0.810
A0A060S597
Histone H2B; Belongs to the histone H2B family.
    
 
 0.791
Your Current Organism:
Trametes cinnabarina
NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.
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