A0A060SC63 protein (Trametes cinnabarina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060SC63

Uncharacterized protein. (96 aa)

Predicted Functional Partners:

A0A060SE78

0.723

A0A060SK06

0.707

A0A060SWP8

0.705

A0A060SDS3

0.700

A0A060SEC9

0.697

A0A060SNW5

0.691

A0A060SHX8

0.689

A0A060SI96

0.681

A0A060SFG4

0.645

A0A060S621

0.643

Your Current Organism:

Trametes cinnabarina

NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060S621	A0A060SC63	NADH-ubiquinone oxidoreductase; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Uncharacterized protein.	0.643
A0A060S621	A0A060SI96	NADH-ubiquinone oxidoreductase; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Uncharacterized protein.	0.638
A0A060SC63	A0A060S621	Uncharacterized protein.	NADH-ubiquinone oxidoreductase; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.643
A0A060SC63	A0A060SDS3	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.700
A0A060SC63	A0A060SE78	Uncharacterized protein.	Uncharacterized protein.	0.723
A0A060SC63	A0A060SEC9	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.697
A0A060SC63	A0A060SFG4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.645
A0A060SC63	A0A060SHX8	Uncharacterized protein.	Sm domain-containing protein.	0.689
A0A060SC63	A0A060SI96	Uncharacterized protein.	Uncharacterized protein.	0.681
A0A060SC63	A0A060SK06	Uncharacterized protein.	Uncharacterized protein.	0.707
A0A060SC63	A0A060SNW5	Uncharacterized protein.	DNA polymerase.	0.691
A0A060SC63	A0A060SWP8	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.705
A0A060SDS3	A0A060SC63	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.700
A0A060SDS3	A0A060SEC9	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
A0A060SDS3	A0A060SHX8	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.999
A0A060SDS3	A0A060SK06	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.975
A0A060SDS3	A0A060SWP8	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
A0A060SE78	A0A060SC63	Uncharacterized protein.	Uncharacterized protein.	0.723
A0A060SE78	A0A060SI96	Uncharacterized protein.	Uncharacterized protein.	0.807
A0A060SE78	A0A060SNW5	Uncharacterized protein.	DNA polymerase.	0.999