A0A060SCD2 protein (Trametes cinnabarina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060SCD2

Uncharacterized protein. (310 aa)

Predicted Functional Partners:

A0A060SPL8

0.841

A0A060S205

0.785

A0A060SAP3

0.785

A0A060SP36

0.785

A0A060SFG4

0.705

A0A060S9I2

0.695

A0A060SAK9

0.693

A0A060SEK7

0.693

A0A060SMG8

0.693

A0A060SGH4

0.692

Your Current Organism:

Trametes cinnabarina

NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060S205	A0A060SAP3	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein.	0.952
A0A060S205	A0A060SCD2	Uncharacterized protein.	Uncharacterized protein.	0.785
A0A060S205	A0A060SP36	Uncharacterized protein.	Uncharacterized protein.	0.952
A0A060S9I2	A0A060SAK9	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.999
A0A060S9I2	A0A060SCD2	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.695
A0A060S9I2	A0A060SEK7	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.996
A0A060S9I2	A0A060SGH4	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.999
A0A060S9I2	A0A060SMG8	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
A0A060SAK9	A0A060S9I2	Uncharacterized protein.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999
A0A060SAK9	A0A060SCD2	Uncharacterized protein.	Uncharacterized protein.	0.693
A0A060SAK9	A0A060SEK7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A060SAK9	A0A060SGH4	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A060SAK9	A0A060SMG8	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
A0A060SAP3	A0A060S205	Cytochrome b5 heme-binding domain-containing protein.	Uncharacterized protein.	0.952
A0A060SAP3	A0A060SCD2	Cytochrome b5 heme-binding domain-containing protein.	Uncharacterized protein.	0.785
A0A060SAP3	A0A060SP36	Cytochrome b5 heme-binding domain-containing protein.	Uncharacterized protein.	0.952
A0A060SCD2	A0A060S205	Uncharacterized protein.	Uncharacterized protein.	0.785
A0A060SCD2	A0A060S9I2	Uncharacterized protein.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.695
A0A060SCD2	A0A060SAK9	Uncharacterized protein.	Uncharacterized protein.	0.693
A0A060SCD2	A0A060SAP3	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein.	0.785