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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060SDF4Uncharacterized protein. (205 aa)    
Predicted Functional Partners:
A0A060SDE9
PUA domain-containing protein.
   
 0.877
A0A060SFE2
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.838
TRM82
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.792
A0A060SE55
RPOLD domain-containing protein.
  
  
 0.789
A0A060SJS0
RPOLD domain-containing protein.
  
  
 0.789
A0A060SLH0
Uncharacterized protein.
   
    0.770
A0A060SDD5
Uncharacterized protein.
  
   0.748
A0A060SAE7
TRUD domain-containing protein.
   
 
 0.728
A0A060STA5
U3 small nucleolar RNA-associated protein 22.
   
   0.720
A0A060SVW1
WD_REPEATS_REGION domain-containing protein.
   
   0.708
Your Current Organism:
Trametes cinnabarina
NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.
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