STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060SER6Uncharacterized protein. (1383 aa)    
Predicted Functional Partners:
A0A060ST40
Uncharacterized protein.
    
 0.999
A0A060SQ44
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 0.996
A0A060SGL8
Uncharacterized protein.
    
 0.974
A0A060SAP9
Nudix hydrolase domain-containing protein.
    
 0.939
A0A060SKR8
Uncharacterized protein.
    
 0.939
A0A060SN47
Uncharacterized protein.
    
 0.939
A0A060S661
Uncharacterized protein.
  
 0.867
A0A060SKC3
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
 
 0.861
A0A060SAU1
Uncharacterized protein.
   
 0.841
A0A060SG99
YjeF N-terminal domain-containing protein.
   
 0.841
Your Current Organism:
Trametes cinnabarina
NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.
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