STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060SFW1Uncharacterized protein. (388 aa)    
Predicted Functional Partners:
A0A060SPL8
Uncharacterized protein.
    
 0.907
A0A060SFW4
Uncharacterized protein.
   
 0.699
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.676
A0A060SLY2
Ipi1_N domain-containing protein.
    
 0.668
A0A060SCP0
CP-type G domain-containing protein.
   
  0.649
A0A060SRB0
Uncharacterized protein.
    
 0.648
A0A060SEV9
Uncharacterized protein.
    
  0.641
A0A060S7J8
CLP1_P domain-containing protein.
    
  0.639
A0A060SLH1
Uncharacterized protein.
    
  0.636
A0A060SQC4
Ribosomal_L2_C domain-containing protein.
    
  0.632
Your Current Organism:
Trametes cinnabarina
NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.