Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A060SIM3Uncharacterized protein. (291 aa)    
Predicted Functional Partners:
A0A060SNJ3
Uncharacterized protein.
   
 
  0.698
A0A060SR52
Uncharacterized protein.
   
 
  0.698
A0A060S2F8
Uncharacterized protein.
   
 
  0.611
A0A060SR38
ADH_N domain-containing protein.
   
 
  0.611
A0A060S460
Uncharacterized protein.
   
 
 0.585
A0A060S7E1
LisH domain-containing protein.
    
 
 0.501
A0A060S7Q6
Uncharacterized protein.
    
 
 0.501
A0A060S5C7
PI3K/PI4K domain-containing protein.
   
  
 0.489
A0A060SD23
Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
      
 0.457
Your Current Organism:
Trametes cinnabarina
NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.
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